Publications & Datasets | Bioinspired Materials NCCR | Université de Fribourg

Publications & Datasets

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The full list of datasets can be found here

Wide-field fluorescence lifetime imaging of single molecules with a gated single-photon camera
Ronceray Nathan, Bennani Salim, Mitsioni Marianna Fanouria, Siegel Nicole, Marcaida Maria J., Bruschini Claudio, Charbon Edoardo, Roy Rahul, Dal Peraro Matteo, Acuna Guillermo P., Radenovic Aleksandra
Light: Science & Applications 14 (2025)

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Dataset title : Dataset for "Wide-field fluorescence lifetime imaging of single molecules with a gated single-photon camera"

Dataset persistent identifier : 10.1038/s41377-025-01901-2

Responsible person : RADENOVIC Aleksandra

Project(s) involved : Atomically thin mechanosensitive membranes for water treatment

URL : https://zenodo.org/records/15570984

Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
Ibrahim Khalid A., Cathala Camille, Bevilacqua Carlo, Feletti Lely, Prevedel Robert, Lashuel Hilal A., Radenovic Aleksandra
Nature Communications 16 (2025)

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Dataset title : Self-Driving Microscopy Detects the Onset of Protein Aggregation and Enables Intelligent Brillouin Imaging

Dataset persistent identifier : 10.5281/zenodo.15464345

Responsible person : IBRAHIM Khalid

Project(s) involved : Atomically thin mechanosensitive membranes for water treatment

URL : https://zenodo.org/records/15464345

View dataset 2

Dataset title : Self-Driving Microscopy Detects the Onset of Protein Aggregation and Enables Intelligent Brillouin Imaging (Software)

Dataset persistent identifier : 10.5281/zenodo.15464500

Responsible person : IBRAHIM Khalid

Project(s) involved : Atomically thin mechanosensitive membranes for water treatment

URL : https://zenodo.org/records/15464500

Distance‐Dependent Interaction between a Single Emitter and a Single Dielectric Nanoparticle Using DNA Origami
Siegel Nicole, Sanz‐Paz María, González‐Colsa Javier, Serrera Guillermo, Zhu Fangjia, Szalai Alan M., Kołątaj Karol, Fujii Minoru, Sugimoto Hiroshi, Albella Pablo, Acuna Guillermo P.
Small Structures (2025)

Hinge‐Like Mechanochromic Mechanophores Based on [2.2]Paracyclophane
Shimizu Shohei, Clough Jess M., Weder Christoph, Sagara Yoshimitsu
Angewandte Chemie International Edition (2025)

Healable Glassy Metallosupramolecular Polymers
Mak-iad Chaninya, Bertossi Luca, Formon Georges J. M., Weder Christoph
ACS Macro Letters 14 , 996-1003 (2025)

Enhancing structural colour through absorption
Nedyalkova Miroslava, Vecini Diana Potes, Paluch Andrew S., Lattuada Marco
Physical Chemistry Chemical Physics (2025)

Morphodynamics of human early brain organoid development
Jain Akanksha, Gut Gilles, Sanchis-Calleja Fátima, Tschannen Reto, He Zhisong, Luginbühl Nicolas, Zenk Fides, Chrisnandy Antonius, Streib Simon, Harmel Christoph, Okamoto Ryoko, Santel Malgorzata, Seimiya Makiko, Holtackers René, Rohland Juliane K., Jansen Sophie Martina Johanna, Lutolf Matthias P., Camp J. Gray, Treutlein Barbara
Nature (2025)

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Dataset title : Morphodynamics_of_human_early_brain_organoid_development_Jain_Gut_2025_processed_scRNAseq_data

Dataset persistent identifier : 10.5281/zenodo.15236860

Responsible person : LUTOLF Matthias

Project(s) involved : 3D printing of functional organoids using viscoelastic capsules

URL : https://zenodo.org/records/15236860

View dataset 2

Dataset title : Morphodynamics_of_human_early_brain_organoid_development_Jain_Gut_2025_processed_anndata

Dataset persistent identifier : 10.5281/zenodo.15584429

Responsible person : LUTOLF Matthias

Project(s) involved : 3D printing of functional organoids using viscoelastic capsules

URL : https://zenodo.org/records/15584429

Tunable Photonic Paints via Block Copolymer Self-Assembly and Refractive Index Engineering
Bertucci Simone, Schobinger Remi, Mummolo Liviana, Schwarz Niklas, Lova Paola, Weder Christoph, Comoretto Davide, Steiner Ullrich, Di Stasio Francesco, Dodero Andrea
ACS Applied Polymer Materials 7 , 8743-8754 (2025)

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Dataset title : Tunable Photonic Paints via Block-Copolymer Self-Assembly and Refractive Index Engineering

Dataset persistent identifier : 10.5281/zenodo.15669245

Responsible person : DODERO Andrea

Project(s) involved : Complete photonic band gap materials made by self-assembly of bottlebrush block terpolymers

URL : https://zenodo.org/records/15669245

Intermolecular Dynamics of Monoglyceride Mesophases with Their Biomacromolecular Corona
Fong Wye-Khay, Vanhecke Dimitri, Hauser Daniel, Balog Sandor, Lemal Philipp, Montasseri Shiva, Rothen-Rutishauser Barbara, Petri-Fink Alke
Molecular Pharmaceutics 22 , 4221-4229 (2025)

3D printing of self-healing longevous multi-sensory e-skin
Georgopoulou Antonia, Lee Sudong, Dai Benhui, Bono Francesca, Hughes Josie, Amstad Esther
Communications Materials 6 (2025)

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Dataset title : 3D Printing of Self-healing Longevous Multi-sensory E-Skin

Dataset persistent identifier : 10.5281/zenodo.14608429

Responsible person : GEORGOPOULOU PAPADONIKOLAKI Antonia

Project(s) involved : Electronic skin with selective multi-sensing capabilities inspired by natural sensory neuro-receptors

URL : https://zenodo.org/records/14608429

Fluorinated Aromatic Amide Helices: Synthesis and Modeling of Helical Handedness
Farooq Saquib, Nedyalkova Miroslava, Pal Subhajit, Crochet Aurelien, Lattuada Marco, Kilbinger Andreas F. M.
Macromolecules 58 , 5990-5994 (2025)

Genetic Impacts on the Structure and Mechanics of Cellulose Made by Bacteria
Laurent Julie M., Steinacher Mathias, Kan Anton, Ritter Maximilian, Leutert Mario, Bienz Siiri, Häberlin David, Kumar Naresh, Studart André R.
Advanced Science (2025)

The impact of cell density variations on nanoparticle uptake across bioprinted A549 gradients
Di Stolfo Luigi, Lee Wang Sik, Vanhecke Dimitri, Balog Sandor, Taladriz-Blanco Patricia, Petri-Fink Alke, Rothen-Rutishauser Barbara
Frontiers in Bioengineering and Biotechnology 13 (2025)

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Dataset title : The Impact of Cell Density Variations on Nanoparticle Uptake Across Bioprinted A549 Gradients

Dataset persistent identifier : 10.5281/zenodo.14936452

Responsible person : DI STOLFO Luigi

Project(s) involved : Dynamic surfaces for tissue engineering and tissue remodeling

URL : https://zenodo.org/records/14936452

Integrating surface chemistry properties and machine learning to map the toxicity landscape of superparamagnetic iron oxide nanoparticles
Nedkyalkova Miroslava, Vasighi Mahdi, Lattuada Marco
Chemosphere 378 , 144381 (2025)

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Dataset title : Descriptors space: chemeometrical and experimental

Dataset persistent identifier : 10.5281/zenodo.15496415

Responsible person : NEDYALKOVA Miroslava

Project(s) involved : Enhancing structural colour through absorption

URL : https://zenodo.org/records/15496415

Controlled Sensing of User-Defined Aptamer-Based Targets Using Scanning Ionic Conductance Spectroscopy
Miljkovic Helena, Feletti Lely, Pistoletti Blanchet Gordanna, Penedo Marcos, Ayar Zahra, Drake Barney, Kuhn Alexandre, Yang Wayne, Fantner Georg E., Radenovic Aleksandra
ACS Nano 19 , 13139-13148 (2025)

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Dataset title : Controlled Sensing of User-Defined Aptamer-Based Targets Using Scanning Ionic Conductance Spectroscopy

Dataset persistent identifier : 10.5281/zenodo.15274057

Responsible person : MILJKOVIC Helena

Project(s) involved : Atomically thin mechanosensitive membranes for water treatment

URL : https://zenodo.org/records/15274057

Rapid Water Permeation by Aramid Foldamer Nanochannels With Hydrophobic Interiors
Farooq Saquib, Malla Javid Ahmad, Nedyalkova Miroslava, Freire Rafael V. M., Mandal Indradip, Crochet Aurelien, Salentinig Stefan, Lattuada Marco, McTernan Charlie T., Kilbinger Andreas F. M.
Angewandte Chemie International Edition (2025)

Accessible homeostatic gastric organoids reveal secondary cell type-specific host-pathogen interactions in Helicobacter pylori infections
Hofer Moritz, Kim Youlim, Broguiere Nicolas, Gorostidi François, Klein Jessica A., Amieva Manuel R., Lutolf Matthias P.
Nature Communications 16 (2025)

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Dataset title : Accessible Homeostatic Gastric Organoids Reveal Secondary Cell Type-Specific Host-Pathogen Interactions in Helicobacter Pylori Infections

Dataset persistent identifier : GSE255276

Responsible person : LUTOLF Matthias

Project(s) involved : 3D printing of functional organoids using viscoelastic capsules

URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE255276

Supramolecular Polymer Brushes Grafted via Atom Transfer Radical Polymerization from Surfaces Presenting Non-covalent, Host–Guest Complex-Based Initiators
Metze Friederike K., Klok Harm-Anton
Macromolecules (2025)

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Dataset title : Supramolecular Polymer Brushes Grafted via Atom Transfer Radical Polymerization from Surfaces Presenting Non-Covalent, Host – Guest Complex-Based Initiators

Dataset persistent identifier : 10.5281/zenodo.14804108

Responsible person : METZE Friederike

Project(s) involved : Mechanically responsive nanoparticles

URL : https://zenodo.org/records/14804108

One-pot synthesis of photonic microparticles doped with light-emitting quantum dots
Bertucci Simone, Piccinotti Davide, Garbarino Mauro, Escher Andrea, Bravetti Gianluca, Weder Christoph, Lova Paola, Comoretto Davide, Steiner Ullrich, Di Stasio Francesco, Dodero Andrea
Nanoscale (2025)

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Dataset title : One-pot synthesis of photonic microparticles doped with light-emitting quantum dots

Dataset persistent identifier : 10.5281/zenodo.14566782

Responsible person : DODERO Andrea

Project(s) involved : Complete photonic band gap materials made by self-assembly of bottlebrush block terpolymers

URL : https://zenodo.org/records/14566782

N-Amino Norbornene Imides as Scalable Monomers for Living Ring-Opening Metathesis Polymerization
Ahmed Ijaj, Mandal Indradip, Freire Rafael V. M., Crochet Aurelien, Salentinig Stefan, Kilbinger Andreas F. M.
ACS Macro Letters 14 , 359-363 (2025)

A Free Energy Model for the Plateau Shear Modulus in Thermosensitive Microgel Suspensions
Bergman Maxime, Xu Yixuan, Muñéton Díaz José, Zhang Chi, Mason Thomas G., Scheffold Frank
Langmuir (2025)

Monitoring Dynamic Conformations of a Single Fluorescent Molecule Inside a Protein Cavity
Sosa Santiago, Szalai Alan M., Lopez Lucía F., Prieto Juan Manuel, Zaza Cecilia, Adamczyk Aleksandra K., Bonomi Hernán R., Marti Marcelo A., Acuna Guillermo P., Goldbaum Fernando A., Stefani Fernando D.
Small Methods (2025)

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Dataset title : Dataset and scripts for: "Monitoring dynamic conformations of a single molecule inside a protein cavity"

Dataset persistent identifier : 10.5281/zenodo.14559830

Responsible person : ACUNA Guillermo

Project(s) involved : Bottom up meets top down: Controlling assembly from mm to nm

URL : https://zenodo.org/records/14559830

Large and Stable Nanopores Formed by Complement Component 9 for Characterizing Single Folded Proteins
Chanakul Wachara, Mukhopadhyay Anasua, Awasthi Saurabh, Protopopova Anna D., Ianiro Alessandro, Mayer Michael
ACS Nano (2025)

Label-free (fluorescence-free) sensing of a single DNA molecule on DNA origami using a plasmon-enhanced WGM sensor
Ghamari Shahin, Chiarelli Germán, Kołątaj Karol, Subramanian Sivaraman, Acuna Guillermo P., Vollmer Frank
Nanophotonics (2025)

Comparative Analysis of pK_a Predictions for Arsonic Acids Using Density Functional Theory-Based and Machine Learning Approaches
Nedyalkova Miroslava, Heredia Diana, Barroso-Flores Joaquín, Lattuada Marco
ACS Omega 10 , 3128-3140 (2025)

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Dataset title : Comparative Analysis of pKa Predictions for Arsonic Acids Using Density Functional Theory-Based and Machine Learning Approaches

Dataset persistent identifier : 10.5281/zenodo.14859965

Responsible person : NEDYALKOVA Miroslava

Project(s) involved : Enhancing structural colour through absorption

URL : https://zenodo.org/records/14859965

Giant Purcell Broadening and Lamb Shift for DNA-Assembled Near-Infrared Quantum Emitters
Verlekar Sachin, Sanz-Paz Maria, Zapata-Herrera Mario, Pilo-Pais Mauricio, Kołątaj Karol, Esteban Ruben, Aizpurua Javier, Acuna Guillermo P., Galland Christophe
ACS Nano 19 , 3172-3184 (2025)

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Dataset title : Data and code associated with the paper 'Giant Purcell Broadening and Lamb Shift for DNA-Assembled Near-Infrared Quantum Emitters'

Dataset persistent identifier : 10.5281/zenodo.14524514

Responsible person : ACUNA Guillermo

Project(s) involved : DNA Origami-based sensor for the multiplex detection of mRNA in cancer

URL : https://zenodo.org/records/14524514

Long-Term Protein Synthesis with PURE in a Mesoscale Dialysis System
Roset Julià Laura, Grasemann Laura, Stellacci Francesco, Maerkl Sebastian J.
ACS Synthetic Biology (2025)