Datasets

The full list of datasets underlying the articles of the NCCR Bio-inspired Materials can be found below. Click the desired project to see the associated datasets.

It is also possible to find the available datasets by browsing through the full list of publications.

Mechanically responsive and mechanically adapting polymers

Dataset title : Mechanoresponsive elastomers made with excimer-forming telechelics
Dataset persistent identifier : 10.5281/zenodo.4249552
Responsible person : KIEBALA Derek
Project(s) involved : Mechanically responsive and mechanically adapting polymers
URL : https://zenodo.org/record/4249552
Related article: Kiebala Derek J., Fan Zhiyuan, Calvino Celine, Fehlmann Lauren, Schrettl Stephen, Weder Christoph, Organic Materials 2, 313 (2020)
Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates

Dataset title : Hemozoin-catalyzed precipitation polymerization as an assay for malaria diagnosis
Dataset persistent identifier : DOI 10.5281/zenodo.2541603
Responsible person : RIFAIE GRAHAM Omar
Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
URL : https://zenodo.org/record/2541603#.XirEC2hKiUk
Related article: Rifaie-Graham Omar, Pollard Jonas, Raccio Samuel, Balog Sandor, Rusch Sebastian, Hernández-Castañeda María Andrea, Mantel Pierre-Yves, Beck Hans-Peter, Bruns Nico, Nature Communications 10 (2019)

Dataset title : Light-responsive block copolymers with a spiropyran located at the block junction
Dataset persistent identifier : 10.5281/zenodo.3314608
Responsible person : APEBENDE Edward
Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
URL : https://zenodo.org/record/3314608#.YMnETKgzaUk
Related article: Apebende Edward A., Dubois Laurent, Bruns Nico, European Polymer Journal 119, 83 (2019)
Mechano-responsive CaCO3-based coatings

Dataset title :Load-bearing hydrogels ionically reinforced through competitive ligand exchanges
Dataset persistent identifier : md5:b4e39d46a4e58ddc2ae050be4ee8097a
Responsible person : HIRSCH Matteo
Project(s) involved : Mechano-responsive CaCO3-based coatings
URL : https://zenodo.org/record/5543689#.YVb297gzaUk
Related article: Hirsch Matteo, Steinacher Mathias, Zhao Ran, Amstad Esther Biomaterials Science 9, 6753 (2021)
Design of novel optical materials via self-assembly of patchy particles

Dataset title : Design of Experimental (RSM) model, ANOVA table, SEM, VSM and Zeta potecial data for the nanocrystal clusters based on iron oxide
Dataset persistent identifier : 10.5281/zenodo.5055479
Responsible person : NEDYALKOVA Miroslava
Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
URL : https://zenodo.org/record/5055479#.YOLMtugzaUl
Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

Dataset title : Dynamic light scattering data
Dataset persistent identifier : 10.5281/zenodo.5055535
Responsible person : NEDYALKOVA Miroslava
Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
URL : https://zenodo.org/record/5055535#.YOLSyOgzaUl
Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)
Interplay of order and disorder in biophotonic materials

Dataset title : Strong circular dichroism in single gyroid optical metamaterials
Dataset persistent identifier : 10.5281/zenodo.3760438
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://zenodo.org/record/3760438#.XrkmTWgzZjU
Related article: Kilchoer Cédric, Abdollahi Narjes, Dolan James A., Abdelrahman Doha, Saba Matthias, Wiesner Ulrich, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., Advanced Optical Materials, 1902131 (2020)

Dataset title : What’s in a band? The function of the colour and banding pattern of the Banded Swallowtail
Dataset persistent identifier : 10.5061/dryad.qz612jm9p
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://datadryad.org/stash/dataset/doi:10.5061/dryad.qz612jm9p
Related article: Tan Eunice J., Wilts Bodo D., Tan Brent T. K., Monteiro Antónia, Ecology and Evolution (2020)

Dataset title : Determining the complex Jones matrix elements of a chiral 3D optical metamaterial
Dataset persistent identifier : 10.5281/zenodo.3471335
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://zenodo.org/record/3471335#.YMnDmqgzaUk
Related article: Kilchoer Cédric, Abdollahi Narjes, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., APL Photonics 4, 126107 (2019)
Structurally colored micron scaled pigments for inkjet printing

Dataset title : Transition from light diffusion to localization in three-dimensional amorphous dielectric networks near the band edge
Dataset persistent identifier : 10.5281/zenodo.3968424
Responsible person : FROUFE PEREZ Luis Salvador
Project(s) involved : Structurally colored micron scaled pigments for inkjet printing
URL : https://doi.org/10.5281/zenodo.3968424
Related article: Haberko Jakub, Froufe-Pérez Luis S., Scheffold Frank, Nature Communications 11 (2020)
Disguising the core: Photonic core-shell particles

Dataset title :Research Data supporting "Photonic particles made by the confined self-assembly of a supramolecular comb-like block copolymer"
Dataset persistent identifier : 10.5281/zenodo.5517508
Responsible person : MORICEAU Guillaume
Project(s) involved : Disguising the core: Photonic core-shell particles
URL : https://zenodo.org/record/5517508#.YVFZQjFBw2x
Related article: Moriceau Guillaume, Kilchoer Cédric, Djeghdi Kenza, Weder Christoph, Steiner Ullrich, Wilts Bodo D., Gunkel Ilja Macromolecular Rapid Communications, 2100522 (2021)
Bioinspired DNA self-assembly of nanophotonic devices

Dataset title :cibion-conicet/SIMPLER v1.0.0
Dataset persistent identifier : 10.5281/zenodo.4300989
Responsible person : ACUNA Guillermo
Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
URL : https://zenodo.org/record/4300989#.YMnmFKgzaUk
Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

Dataset title : SIMPLER_data
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.13326599.v1
Responsible person : ACUNA Guillermo
Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
URL : https://figshare.com/articles/figure/Source_data_for_Szalai_et_al/13326599/1
Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)
Novel antiviral supramolecular materials

Dataset title :Nature-inspired Circular-economy Recycling (NaCRe) for Proteins: Proof of Concept
Dataset persistent identifier : 10.5281/zenodo.5167184
Responsible person : GIAVERI Simone
Project(s) involved : Novel antiviral supramolecular materials
URL : https://zenodo.org/record/5167184#.YVqQDDFBw2x
Related article: Giaveri Simone, Schmitt Adeline Marie, Roset Julià Laura, Scamarcio Vincenzo, Murello Anna, Cheng Shiyu, Menin Laure, Ortiz Daniel, Patiny Luc, Bolisetty Sreenath, Mezzenga Raffaele, Maerkl Sebastian Josef, Stellacci Francesco Advanced Materials, 2104581 (2021)

Dataset title : SARS-CoV-2 inhibition by sulfonated compounds
Dataset persistent identifier : 10.5281/zenodo.4321274
Responsible person : GASBARRI Matteo
Project(s) involved : Novel antiviral supramolecular materials
URL : https://zenodo.org/record/4321274#.X9eaT-lKhTZ
Related article: Gasbarri Matteo, V’kovski Philip, Torriani Giulia, Thiel Volker, Stellacci Francesco, Tapparel Caroline, Cagno Valeria, Microorganisms 8, 1894 (2020)

Dataset title : Modified cyclodextrins as broad-spectrum antivirals
Dataset persistent identifier : 10.5281/zenodo.3686789
Responsible person : GASBARRI Matteo
Project(s) involved : Novel antiviral supramolecular materials
URL : https://zenodo.org/record/3686789#.Xl5o4ndFxPb
Related article: Jones Samuel T., Cagno Valeria, Janeček Matej, Ortiz Daniel, Gasilova Natalia, Piret Jocelyne, Gasbarri Matteo, Constant David A., Han Yanxiao, Vuković Lela, Král Petr, Kaiser Laurent, Huang Song, Constant Samuel, Kirkegaard Karla, Boivin Guy, Stellacci Francesco, Tapparel Caroline, Science Advances 6, eaax9318 (2020)
NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet

Dataset title :Detection of sub-micro- and nanoplastic particles on gold nanoparticle-based substrates by surface-enhanced Raman scattering (SERS) spectroscopy
Dataset persistent identifier : 10.5281/zenodo.4722747
Responsible person : TALADRIZ-BLANCO Patricia
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet
URL : http://doi.org/10.5281/zenodo.4722747
Related article: Caldwell Jessica, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanomaterials 11, 1149 (2021)

Dataset title : Particle surfaces to study macrophage adherence, migration and clearance
Dataset persistent identifier : 10.5281/zenodo.3819724
Responsible person : SEPTIADI Dedy
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3819724#.YMm6fqgzaUk
Related article: Septiadi Dedy, Lee Aaron, Spuch‐Calvar Miguel, Moore Thomas Lee, Spiaggia Giovanni, Abdussalam Wildan, Rodriguez‐Lorenzo Laura, Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Advanced Functional Materials, 2002630 (2020)

Dataset title : Rapid and sensitive quantification of cellular associated multi-walled carbon nanotubes
Dataset persistent identifier : 10.5281/zenodo.3744716
Responsible person : FINK Alke
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3744717
Related article: Steinmetz Lukas, Bourquin Joel, Barosova Hana, Haeni Laetitia, Caldwell Jessica, Milosevic Ana, Geers Christoph, Bonmarin Mathias, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanoscale 12, 17362 (2020)

Dataset title : Characterization of the shape anisotropy of superparamagnetic iron oxide nanoparticles during thermal decomposition
Dataset persistent identifier : 10.3390/ma13092018
Responsible person : VANHECKE Dimitri
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3876377/export/dcat#.YMm8OagzaUk
Related article: Vanhecke Dimitri, Crippa Federica, Lattuada Marco, Balog Sandor, Rothen-Rutishauser Barbara, Petri-Fink Alke, Materials 13, 2018 (2020)
Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake

Dataset title : Cellular Uptake of Silica and Gold Nanoparticles Induces Early Activation of Nuclear Receptor NR4A1
Dataset persistent identifier : 10.5281/zenodo.6125809
Responsible person : ALMEIDA Mauro
Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
URL : https://zenodo.org/record/6125809#.YlA4g8hByUk
Related article: Sousa de Almeida Mauro, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Yajan Phattadon, Petri-Fink Alke, Rothen-Rutishauser Barbara, Nanomaterials 12 , 690 (2022)

Dataset title : Increased uptake of silica nanoparticles in inflamed macrophages but not upon co-exposure to micron-sized particles
Dataset persistent identifier : 10.5281/zenodo.3957810
Responsible person : SUSNIK Eva
Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
URL : https://zenodo.org/record/3957810#.X2Ik_GgzaUk
Related article: Susnik Eva, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Petri-Fink Alke, Rothen-Rutishauser Barbara, Cells 9, 2099 (2020)
Trapping cancer cells with self-assembling biomolecules

Dataset title : Membrane-Interacting DNA Nanotubes Induce Cancer Cell Death
Dataset persistent identifier : 10.5281/zenodo.5186797
Responsible person : KOCABEY Samet
Project(s) involved : Trapping cancer cells with self-assembling biomolecules
URL : https://zenodo.org/record/5186797#.YRpP9Hzis2x
Related article: Kocabey Samet, Ekim Kocabey Aslihan, Schneiter Roger, Rüegg Curzio Nanomaterials 11 , 2003 (2021)

Dataset title : Detection of HER2+ Breast Cancer Cells using Bioinspired DNA-Based Signal Amplification
Dataset persistent identifier : 10.5281/zenodo.3698042
Responsible person : KOCABEY Samet
Project(s) involved : Trapping cancer cells with self-assembling biomolecules
URL : https://zenodo.org/record/3698042#.XmJwg0oo-Uk
Related article: Rafiee Sarah, Kocabey Samet, Mayer Michael, List Jonathan, Ruegg Curzio, ChemMedChem (2020)
Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing

Dataset title : Correlative 3D microscopy of single cells using super-resolution and scanning ion-conductance microscopy
Dataset persistent identifier :
Responsible person : NAVIKAS Vytautas
Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
URL : https://srm.epfl.ch/DatasetPage?name=SICM_SOFI_dataset
Related article: Navikas Vytautas, Leitao Samuel M., Grussmayer Kristin S., Descloux Adrien, Drake Barney, Yserentant Klaus, Werther Philipp, Herten Dirk-Peter, Wombacher Richard, Radenovic Aleksandra, Fantner Georg E. Nature Communications 12 (2021)

Dataset title : Waveguide-PAINT offers an open platform for large field-of-view super-resolution imaging
Dataset persistent identifier : 10.5281/zenodo.1475055
Responsible person : GLUSHKOV Evgenii
Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
URL : https://zenodo.org/record/1475055#.XmertqhKiUk
Related article: Archetti Anna, Glushkov Evgenii, Sieben Christian, Stroganov Anton, Radenovic Aleksandra, Manley Suliana, Nature Communications 10 (2019)
Steering tissue morphogenesis via stimuli-sensitive hydrogels

Dataset title : Synthetic dynamic hydrogels promote degradation-independent in vitro organogenesis
Dataset persistent identifier : 10.5281/zenodo.5243103
Responsible person : CHRISNANDY Antonius
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://zenodo.org/record/5243103#.YZN8amDMKUk
Related article: Chrisnandy Antonius, Blondel Delphine, Rezakhani Saba, Broguiere Nicolas, Lutolf Matthias P. Nature Materials (2021)

Dataset title : Homeostatic mini-intestines through scaffold-guided organoid morphogenesis
Dataset persistent identifier : GSE148366
Responsible person : Nicolas Broguiere

Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://github.com/nbroguiere/Miniguts
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Mini-guts.1
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328232.v1
Responsible person : Mike Nikolaev
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://figshare.com/articles/dataset/GSEA_CellTypes_Cryptosporidium_Infection_xlsx/12328232/1
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Mini-guts.2
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328286.v1
Responsible person : Mike Nikolaev
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://figshare.com/articles/figure/Supplementary_Figure_3_pdf/12328286/1
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Miniguts code
Dataset persistent identifier :
Responsible person : Nicolas Broguiere
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://github.com/nbroguiere/Miniguts
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)
Design of digestion-inspired functional food nano-biointerfaces

Dataset title :pH-responsive aminolipid nanocarriers for antimicrobial peptide delivery
Dataset persistent identifier : 10.5281/zenodo.5042103
Responsible person : GONTSARIK Mark
Project(s) involved : Design of digestion-inspired functional food nano-biointerfaces
URL : https://zenodo.org/record/5042103#.YOLT_egzaUl
Related article: Gontsarik Mark, Mansour Amira Ben, Hong Linda, Guizar-Sicairos Manuel, Salentinig Stefan, Journal of Colloid and Interface Science 603, 398 (2021)
Development of a Microfluidic Platform

Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [Embryoids10XG]
Dataset persistent identifier : GSE171209
Responsible person : Nicolas Broguiere
Project(s) involved : Development of a Microfluidic Platform
URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171209
Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [EmbryoidsTruseq3]
Dataset persistent identifier : GSE171211
Responsible person : Nicolas Broguiere
Project(s) involved : Development of a Microfluidic Platform
URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)
Support staff

Dataset title : Versatile macroscale concentration gradients of nanoparticles in soft nanocomposites
Dataset persistent identifier : 10.5281/zenodo.3673890
Responsible person : BALOG Sandor
Project(s) involved : Support staff
URL : https://zenodo.org/record/3673890#.Xk-a1yMo_b0
Related article: Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Balog Sandor, Small 1905192 (2020)