Datasets

The full list of datasets associated to articles of the NCCR Bio-inspired Materials can be found below. It is also possible to find the available datasets by browsing through the full list of publications.

Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [Embryoids10XG]
Dataset persistent identifier : GSE171209
Responsible person : Nicolas Broguiere
Project(s) involved : Development of a Microfluidic Platform
URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171209
Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [EmbryoidsTruseq3]
Dataset persistent identifier : GSE171211
Responsible person : Nicolas Broguiere
Project(s) involved : Development of a Microfluidic Platform
URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

Dataset title : Membrane-Interacting DNA Nanotubes Induce Cancer Cell Death
Dataset persistent identifier : 10.5281/zenodo.5186797
Responsible person : KOCABEY Samet
Project(s) involved : Trapping cancer cells with self-assembling biomolecules
URL : https://zenodo.org/record/5186797#.YRpP9Hzis2x

Related article: Kocabey Samet, Ekim Kocabey Aslihan, Schneiter Roger, Rüegg Curzio Nanomaterials 11 , 2003 (2021)

Dataset title : Correlative 3D microscopy of single cells using super-resolution and scanning ion-conductance microscopy
Dataset persistent identifier :
Responsible person : NAVIKAS Vytautas
Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
URL : https://srm.epfl.ch/DatasetPage?name=SICM_SOFI_dataset
Related article: Navikas Vytautas, Leitao Samuel M., Grussmayer Kristin S., Descloux Adrien, Drake Barney, Yserentant Klaus, Werther Philipp, Herten Dirk-Peter, Wombacher Richard, Radenovic Aleksandra, Fantner Georg E. Nature Communications 12 (2021)

Dataset title : pH-responsive aminolipid nanocarriers for antimicrobial peptide delivery
Dataset persistent identifier : 10.5281/zenodo.5042103
Responsible person : GONTSARIK Mark
Project(s) involved : Design of digestion-inspired functional food nano-biointerfaces
URL : https://zenodo.org/record/5042103#.YOLT_egzaUl

Related article: Gontsarik Mark, Mansour Amira Ben, Hong Linda, Guizar-Sicairos Manuel, Salentinig Stefan, Journal of Colloid and Interface Science 603, 398 (2021)

Dataset title : Design of Experimental (RSM) model, ANOVA table, SEM, VSM and Zeta potecial data for the nanocrystal clusters based on iron oxide.
Dataset persistent identifier : 10.5281/zenodo.5055479
Responsible person : NEDYALKOVA Miroslava
Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
URL : https://zenodo.org/record/5055479#.YOLMtugzaUl

Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

Dataset title : Dynamic light scattering data.
Dataset persistent identifier : 10.5281/zenodo.5055535
Responsible person : NEDYALKOVA Miroslava
Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
URL : https://zenodo.org/record/5055535#.YOLSyOgzaUl

Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

Dataset title : Detection of sub-micro- and nanoplastic particles on gold nanoparticle-based substrates by surface-enhanced Raman scattering (SERS) spectroscopy
Dataset persistent identifier : 10.5281/zenodo.4722747
Responsible person : TALADRIZ-BLANCO Patricia
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet
URL : http://doi.org/10.5281/zenodo.4722747

Related article: Caldwell Jessica, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanomaterials 11, 1149 (2021)

Dataset title : cibion-conicet/SIMPLER v1.0.0
Dataset persistent identifier : 10.5281/zenodo.4300989
Responsible person : ACUNA Guillermo
Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
URL : https://zenodo.org/record/4300989#.YMnmFKgzaUk

Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

Dataset title : SIMPLER_data
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.13326599.v1
Responsible person : ACUNA Guillermo
Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
URL : https://figshare.com/articles/figure/Source_data_for_Szalai_et_al/13326599/1
Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

Dataset title : Mechanoresponsive elastomers made with excimer-forming telechelics
Dataset persistent identifier : 10.5281/zenodo.4249552
Responsible person : KIEBALA Derek
Project(s) involved : Adaptive functional polymers and nanocontainers
URL : https://zenodo.org/record/4249552
Related article: Kiebala Derek J., Fan Zhiyuan, Calvino Celine, Fehlmann Lauren, Schrettl Stephen, Weder Christoph, Organic Materials 2, 313 (2020)

Dataset title : SARS-CoV-2 inhibition by sulfonated compounds
Dataset persistent identifier : 10.5281/zenodo.4321274
Responsible person : GASBARRI Matteo
Project(s) involved : Novel antiviral supramolecular materials
URL : https://zenodo.org/record/4321274#.X9eaT-lKhTZ
Related article: Gasbarri Matteo, V’kovski Philip, Torriani Giulia, Thiel Volker, Stellacci Francesco, Tapparel Caroline, Cagno Valeria, Microorganisms 8, 1894 (2020)

Dataset title : Transition from light diffusion to localization in three-dimensional amorphous dielectric networks near the band edge
Dataset persistent identifier : 10.5281/zenodo.3968424
Responsible person : FROUFE PEREZ Luis Salvador
Project(s) involved : Structurally colored micron scaled pigments for inkjet printing
URL : https://doi.org/10.5281/zenodo.3968424
Related article: Haberko Jakub, Froufe-Pérez Luis S., Scheffold Frank, Nature Communications 11 (2020)

Dataset title : Homeostatic mini-intestines through scaffold-guided organoid morphogenesis
Dataset persistent identifier : GSE148366
Responsible person : Nicolas Broguiere
URL : https://github.com/nbroguiere/Miniguts
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Mini-guts.1
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328232.v1
Responsible person : Mike Nikolaev
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://figshare.com/articles/dataset/GSEA_CellTypes_Cryptosporidium_Infection_xlsx/12328232/1
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Mini-guts.2
Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328286.v1
Responsible person : Mike Nikolaev
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://figshare.com/articles/figure/Supplementary_Figure_3_pdf/12328286/1
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Miniguts code
Dataset persistent identifier :
Responsible person : Nicolas Broguiere
Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
URL : https://github.com/nbroguiere/Miniguts
Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

Dataset title : Increased uptake of silica nanoparticles in inflamed macrophages but not upon co-exposure to micron-sized particles
Dataset persistent identifier : 10.5281/zenodo.3957810
Responsible person : SUSNIK Eva
Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
URL : https://zenodo.org/record/3957810#.X2Ik_GgzaUk
Related article: Susnik Eva, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Petri-Fink Alke, Rothen-Rutishauser Barbara, Cells 9, 2099 (2020)

Dataset title : Particle surfaces to study macrophage adherence, migration and clearance
Dataset persistent identifier : 10.5281/zenodo.3819724
Responsible person : SEPTIADI Dedy
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3819724#.YMm6fqgzaUk
Related article: Septiadi Dedy, Lee Aaron, Spuch‐Calvar Miguel, Moore Thomas Lee, Spiaggia Giovanni, Abdussalam Wildan, Rodriguez‐Lorenzo Laura, Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Advanced Functional Materials, 2002630 (2020)

Dataset title : Rapid and sensitive quantification of cellular associated multi-walled carbon nanotubes
Dataset persistent identifier : 10.5281/zenodo.3744716
Responsible person : FINK Alke
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3744717
Related article: Steinmetz Lukas, Bourquin Joel, Barosova Hana, Haeni Laetitia, Caldwell Jessica, Milosevic Ana, Geers Christoph, Bonmarin Mathias, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanoscale 12, 17362 (2020)

Dataset title : Strong circular dichroism in single gyroid optical metamaterials
Dataset persistent identifier : 10.5281/zenodo.3760438
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://zenodo.org/record/3760438#.XrkmTWgzZjU
Related article: Kilchoer Cédric, Abdollahi Narjes, Dolan James A., Abdelrahman Doha, Saba Matthias, Wiesner Ulrich, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., Advanced Optical Materials, 1902131 (2020)

Dataset title : Characterization of the shape anisotropy of superparamagnetic iron oxide nanoparticles during thermal decomposition
Dataset persistent identifier : 10.3390/ma13092018
Responsible person : VANHECKE Dimitri
Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
URL : https://zenodo.org/record/3876377/export/dcat#.YMm8OagzaUk
Related article: Vanhecke Dimitri, Crippa Federica, Lattuada Marco, Balog Sandor, Rothen-Rutishauser Barbara, Petri-Fink Alke, Materials 13, 2018 (2020)

Dataset title : What’s in a band? The function of the colour and banding pattern of the Banded Swallowtail
Dataset persistent identifier : 10.5061/dryad.qz612jm9p
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://datadryad.org/stash/dataset/doi:10.5061/dryad.qz612jm9p
Related article: Tan Eunice J., Wilts Bodo D., Tan Brent T. K., Monteiro Antónia, Ecology and Evolution (2020)

Dataset title : Versatile macroscale concentration gradients of nanoparticles in soft nanocomposites
Dataset persistent identifier : 10.5281/zenodo.3673890
Responsible person : BALOG Sandor
Project(s) involved : Support staff
URL : https://zenodo.org/record/3673890#.Xk-a1yMo_b0
Related article: Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Balog Sandor, Small 1905192 (2020)

Dataset title : Detection of HER2+ Breast Cancer Cells using Bioinspired DNA-Based Signal Amplification
Dataset persistent identifier : 10.5281/zenodo.3698042
Responsible person : KOCABEY Samet
Project(s) involved : Trapping cancer cells with self-assembling biomolecules
URL : https://zenodo.org/record/3698042#.XmJwg0oo-Uk
Related article: Rafiee Sarah, Kocabey Samet, Mayer Michael, List Jonathan, Ruegg Curzio, ChemMedChem (2020)

Dataset title : Modified cyclodextrins as broad-spectrum antivirals
Dataset persistent identifier : 10.5281/zenodo.3686789
Responsible person : GASBARRI Matteo
Project(s) involved : Novel antiviral supramolecular materials
URL : https://zenodo.org/record/3686789#.Xl5o4ndFxPb
Related article: Jones Samuel T., Cagno Valeria, Janeček Matej, Ortiz Daniel, Gasilova Natalia, Piret Jocelyne, Gasbarri Matteo, Constant David A., Han Yanxiao, Vuković Lela, Král Petr, Kaiser Laurent, Huang Song, Constant Samuel, Kirkegaard Karla, Boivin Guy, Stellacci Francesco, Tapparel Caroline, Science Advances 6, eaax9318 (2020)

Dataset title : Determining the complex Jones matrix elements of a chiral 3D optical metamaterial
Dataset persistent identifier : 10.5281/zenodo.3471335
Responsible person : WILTS Bodo
Project(s) involved : Interplay of order and disorder in biophotonic materials
URL : https://zenodo.org/record/3471335#.YMnDmqgzaUk
Related article: Kilchoer Cédric, Abdollahi Narjes, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., APL Photonics 4, 126107 (2019)

Dataset title : Hemozoin-catalyzed precipitation polymerization as an assay for malaria diagnosis
Dataset persistent identifier : DOI 10.5281/zenodo.2541603
Responsible person : RIFAIE GRAHAM Omar
Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
URL : https://zenodo.org/record/2541603#.XirEC2hKiUk
Related article: Rifaie-Graham Omar, Pollard Jonas, Raccio Samuel, Balog Sandor, Rusch Sebastian, Hernández-Castañeda María Andrea, Mantel Pierre-Yves, Beck Hans-Peter, Bruns Nico, Nature Communications 10 (2019)

Dataset title : Waveguide-PAINT offers an open platform for large field-of-view super-resolution imaging
Dataset persistent identifier : 10.5281/zenodo.1475055
Responsible person : GLUSHKOV Evgenii
Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
URL : https://zenodo.org/record/1475055#.XmertqhKiUk
Related article: Archetti Anna, Glushkov Evgenii, Sieben Christian, Stroganov Anton, Radenovic Aleksandra, Manley Suliana, Nature Communications 10 (2019)

Dataset title : Light-responsive block copolymers with a spiropyran located at the block junction
Dataset persistent identifier : 10.5281/zenodo.3314608
Responsible person : APEBENDE Edward
Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
URL : https://zenodo.org/record/3314608#.YMnETKgzaUk
Related article: Apebende Edward A., Dubois Laurent, Bruns Nico, European Polymer Journal 119, 83 (2019)