Datasets

The full list of datasets underlying the articles of the NCCR Bio-inspired Materials can be found below. Click the desired project to see the associated datasets.

It is also possible to find the available datasets by browsing through the full list of publications.

• Mechanically responsive and mechanically adapting polymers

  Dataset title : Mechanoresponsive elastomers made with excimer-forming telechelics
  Dataset persistent identifier : 10.5281/zenodo.4249552
  Responsible person : KIEBALA Derek
  Project(s) involved : Mechanically responsive and mechanically adapting polymers
  URL : https://zenodo.org/record/4249552
  Related article: Kiebala Derek J., Fan Zhiyuan, Calvino Celine, Fehlmann Lauren, Schrettl Stephen, Weder Christoph, Organic Materials 2, 313 (2020)

• Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates

  Dataset title : Hemozoin-catalyzed precipitation polymerization as an assay for malaria diagnosis
  Dataset persistent identifier : DOI 10.5281/zenodo.2541603
  Responsible person : RIFAIE GRAHAM Omar
  Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
  URL : https://zenodo.org/record/2541603#.XirEC2hKiUk
  Related article: Rifaie-Graham Omar, Pollard Jonas, Raccio Samuel, Balog Sandor, Rusch Sebastian, Hernández-Castañeda María Andrea, Mantel Pierre-Yves, Beck Hans-Peter, Bruns Nico, Nature Communications 10 (2019)

   

  Dataset title : Light-responsive block copolymers with a spiropyran located at the block junction
  Dataset persistent identifier : 10.5281/zenodo.3314608
  Responsible person : APEBENDE Edward
  Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
  URL : https://zenodo.org/record/3314608#.YMnETKgzaUk
  Related article: Apebende Edward A., Dubois Laurent, Bruns Nico, European Polymer Journal 119, 83 (2019)

• Mechano-responsive CaCO3-based coatings

  Dataset title :Load-bearing hydrogels ionically reinforced through competitive ligand exchanges
  Dataset persistent identifier : md5:b4e39d46a4e58ddc2ae050be4ee8097a
  Responsible person : HIRSCH Matteo
  Project(s) involved : Mechano-responsive CaCO3-based coatings
  URL : https://zenodo.org/record/5543689#.YVb297gzaUk
  Related article: Hirsch Matteo, Steinacher Mathias, Zhao Ran, Amstad Esther Biomaterials Science 9, 6753 (2021)

• Design of novel optical materials via self-assembly of patchy particles

  Dataset title : Design of Experimental (RSM) model, ANOVA table, SEM, VSM and Zeta potecial data for the nanocrystal clusters based on iron oxide
  Dataset persistent identifier : 10.5281/zenodo.5055479
  Responsible person : NEDYALKOVA Miroslava
  Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
  URL : https://zenodo.org/record/5055479#.YOLMtugzaUl
  Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

   

  Dataset title : Dynamic light scattering data
  Dataset persistent identifier : 10.5281/zenodo.5055535
  Responsible person : NEDYALKOVA Miroslava
  Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
  URL : https://zenodo.org/record/5055535#.YOLSyOgzaUl
  Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

• Interplay of order and disorder in biophotonic materials

  Dataset title : Strong circular dichroism in single gyroid optical metamaterials
  Dataset persistent identifier : 10.5281/zenodo.3760438
  Responsible person : WILTS Bodo
  Project(s) involved : Interplay of order and disorder in biophotonic materials
  URL : https://zenodo.org/record/3760438#.XrkmTWgzZjU
  Related article: Kilchoer Cédric, Abdollahi Narjes, Dolan James A., Abdelrahman Doha, Saba Matthias, Wiesner Ulrich, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., Advanced Optical Materials, 1902131 (2020)

   

  Dataset title : What’s in a band? The function of the colour and banding pattern of the Banded Swallowtail
  Dataset persistent identifier : 10.5061/dryad.qz612jm9p
  Responsible person : WILTS Bodo
  Project(s) involved : Interplay of order and disorder in biophotonic materials
  URL : https://datadryad.org/stash/dataset/doi:10.5061/dryad.qz612jm9p
  Related article: Tan Eunice J., Wilts Bodo D., Tan Brent T. K., Monteiro Antónia, Ecology and Evolution (2020)

   

  Dataset title : Determining the complex Jones matrix elements of a chiral 3D optical metamaterial
  Dataset persistent identifier : 10.5281/zenodo.3471335
  Responsible person : WILTS Bodo
  Project(s) involved : Interplay of order and disorder in biophotonic materials
  URL : https://zenodo.org/record/3471335#.YMnDmqgzaUk
  Related article: Kilchoer Cédric, Abdollahi Narjes, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., APL Photonics 4, 126107 (2019)

• Structurally colored micron scaled pigments for inkjet printing

  Dataset title : Transition from light diffusion to localization in three-dimensional amorphous dielectric networks near the band edge
  Dataset persistent identifier : 10.5281/zenodo.3968424
  Responsible person : FROUFE PEREZ Luis Salvador
  Project(s) involved : Structurally colored micron scaled pigments for inkjet printing
  URL : https://doi.org/10.5281/zenodo.3968424
  Related article: Haberko Jakub, Froufe-Pérez Luis S., Scheffold Frank, Nature Communications 11 (2020)

• Disguising the core: Photonic core-shell particles

  Dataset title :Research Data supporting "Photonic particles made by the confined self-assembly of a supramolecular comb-like block copolymer"
  Dataset persistent identifier : 10.5281/zenodo.5517508
  Responsible person : MORICEAU Guillaume
  Project(s) involved : Disguising the core: Photonic core-shell particles
  URL : https://zenodo.org/record/5517508#.YVFZQjFBw2x
  Related article: Moriceau Guillaume, Kilchoer Cédric, Djeghdi Kenza, Weder Christoph, Steiner Ullrich, Wilts Bodo D., Gunkel Ilja Macromolecular Rapid Communications, 2100522 (2021)

• Bioinspired DNA self-assembly of nanophotonic devices

  Dataset title :cibion-conicet/SIMPLER v1.0.0
  Dataset persistent identifier : 10.5281/zenodo.4300989
  Responsible person : ACUNA Guillermo
  Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
  URL : https://zenodo.org/record/4300989#.YMnmFKgzaUk
  Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

   

  Dataset title : SIMPLER_data
  Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.13326599.v1
  Responsible person : ACUNA Guillermo
  Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
  URL : https://figshare.com/articles/figure/Source_data_for_Szalai_et_al/13326599/1
  Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

• Novel antiviral supramolecular materials

  Dataset title :Nature-inspired Circular-economy Recycling (NaCRe) for Proteins: Proof of Concept
  Dataset persistent identifier : 10.5281/zenodo.5167184
  Responsible person : GIAVERI Simone
  Project(s) involved : Novel antiviral supramolecular materials
  URL : https://zenodo.org/record/5167184#.YVqQDDFBw2x
  Related article: Giaveri Simone, Schmitt Adeline Marie, Roset Julià Laura, Scamarcio Vincenzo, Murello Anna, Cheng Shiyu, Menin Laure, Ortiz Daniel, Patiny Luc, Bolisetty Sreenath, Mezzenga Raffaele, Maerkl Sebastian Josef, Stellacci Francesco Advanced Materials, 2104581 (2021)

   

  Dataset title : SARS-CoV-2 inhibition by sulfonated compounds
  Dataset persistent identifier : 10.5281/zenodo.4321274
  Responsible person : GASBARRI Matteo
  Project(s) involved : Novel antiviral supramolecular materials
  URL : https://zenodo.org/record/4321274#.X9eaT-lKhTZ
  Related article: Gasbarri Matteo, V’kovski Philip, Torriani Giulia, Thiel Volker, Stellacci Francesco, Tapparel Caroline, Cagno Valeria, Microorganisms 8, 1894 (2020)

   

  Dataset title : Modified cyclodextrins as broad-spectrum antivirals
  Dataset persistent identifier : 10.5281/zenodo.3686789
  Responsible person : GASBARRI Matteo
  Project(s) involved : Novel antiviral supramolecular materials
  URL : https://zenodo.org/record/3686789#.Xl5o4ndFxPb
  Related article: Jones Samuel T., Cagno Valeria, Janeček Matej, Ortiz Daniel, Gasilova Natalia, Piret Jocelyne, Gasbarri Matteo, Constant David A., Han Yanxiao, Vuković Lela, Král Petr, Kaiser Laurent, Huang Song, Constant Samuel, Kirkegaard Karla, Boivin Guy, Stellacci Francesco, Tapparel Caroline, Science Advances 6, eaax9318 (2020)

• NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet

  Dataset title :Detection of sub-micro- and nanoplastic particles on gold nanoparticle-based substrates by surface-enhanced Raman scattering (SERS) spectroscopy
  Dataset persistent identifier : 10.5281/zenodo.4722747
  Responsible person : TALADRIZ-BLANCO Patricia
  Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet
  URL : http://doi.org/10.5281/zenodo.4722747
  Related article: Caldwell Jessica, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanomaterials 11, 1149 (2021)

   

  Dataset title : Particle surfaces to study macrophage adherence, migration and clearance
  Dataset persistent identifier : 10.5281/zenodo.3819724
  Responsible person : SEPTIADI Dedy
  Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
  URL : https://zenodo.org/record/3819724#.YMm6fqgzaUk
  Related article: Septiadi Dedy, Lee Aaron, Spuch‐Calvar Miguel, Moore Thomas Lee, Spiaggia Giovanni, Abdussalam Wildan, Rodriguez‐Lorenzo Laura, Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Advanced Functional Materials, 2002630 (2020)

  
  Dataset title : Rapid and sensitive quantification of cellular associated multi-walled carbon nanotubes
  Dataset persistent identifier : 10.5281/zenodo.3744716
  Responsible person : FINK Alke
  Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
  URL : https://zenodo.org/record/3744717
  Related article: Steinmetz Lukas, Bourquin Joel, Barosova Hana, Haeni Laetitia, Caldwell Jessica, Milosevic Ana, Geers Christoph, Bonmarin Mathias, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanoscale 12, 17362 (2020)

   

  Dataset title : Characterization of the shape anisotropy of superparamagnetic iron oxide nanoparticles during thermal decomposition
  Dataset persistent identifier : 10.3390/ma13092018
  Responsible person : VANHECKE Dimitri
  Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
  URL : https://zenodo.org/record/3876377/export/dcat#.YMm8OagzaUk
  Related article: Vanhecke Dimitri, Crippa Federica, Lattuada Marco, Balog Sandor, Rothen-Rutishauser Barbara, Petri-Fink Alke, Materials 13, 2018 (2020)

• Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake

  Dataset title : Cellular Uptake of Silica and Gold Nanoparticles Induces Early Activation of Nuclear Receptor NR4A1
  Dataset persistent identifier : 10.5281/zenodo.6125809
  Responsible person : ALMEIDA Mauro
  Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
  URL : https://zenodo.org/record/6125809#.YlA4g8hByUk
  Related article: Sousa de Almeida Mauro, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Yajan Phattadon, Petri-Fink Alke, Rothen-Rutishauser Barbara, Nanomaterials 12 , 690 (2022)

   

  Dataset title : Increased uptake of silica nanoparticles in inflamed macrophages but not upon co-exposure to micron-sized particles
  Dataset persistent identifier : 10.5281/zenodo.3957810
  Responsible person : SUSNIK Eva
  Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
  URL : https://zenodo.org/record/3957810#.X2Ik_GgzaUk
  Related article: Susnik Eva, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Petri-Fink Alke, Rothen-Rutishauser Barbara, Cells 9, 2099 (2020)

• Trapping cancer cells with self-assembling biomolecules

  Dataset title : Membrane-Interacting DNA Nanotubes Induce Cancer Cell Death
  Dataset persistent identifier : 10.5281/zenodo.5186797
  Responsible person : KOCABEY Samet
  Project(s) involved : Trapping cancer cells with self-assembling biomolecules
  URL : https://zenodo.org/record/5186797#.YRpP9Hzis2x
  Related article: Kocabey Samet, Ekim Kocabey Aslihan, Schneiter Roger, Rüegg Curzio Nanomaterials 11 , 2003 (2021)

   

  Dataset title : Detection of HER2+ Breast Cancer Cells using Bioinspired DNA-Based Signal Amplification
  Dataset persistent identifier : 10.5281/zenodo.3698042
  Responsible person : KOCABEY Samet
  Project(s) involved : Trapping cancer cells with self-assembling biomolecules
  URL : https://zenodo.org/record/3698042#.XmJwg0oo-Uk
  Related article: Rafiee Sarah, Kocabey Samet, Mayer Michael, List Jonathan, Ruegg Curzio, ChemMedChem (2020)

• Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing

  Dataset title : Correlative 3D microscopy of single cells using super-resolution and scanning ion-conductance microscopy
  Dataset persistent identifier :
  Responsible person : NAVIKAS Vytautas
  Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
  URL : https://srm.epfl.ch/DatasetPage?name=SICM_SOFI_dataset
  Related article: Navikas Vytautas, Leitao Samuel M., Grussmayer Kristin S., Descloux Adrien, Drake Barney, Yserentant Klaus, Werther Philipp, Herten Dirk-Peter, Wombacher Richard, Radenovic Aleksandra, Fantner Georg E. Nature Communications 12 (2021)

   

  Dataset title : Waveguide-PAINT offers an open platform for large field-of-view super-resolution imaging
  Dataset persistent identifier : 10.5281/zenodo.1475055
  Responsible person : GLUSHKOV Evgenii
  Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
  URL : https://zenodo.org/record/1475055#.XmertqhKiUk
  Related article: Archetti Anna, Glushkov Evgenii, Sieben Christian, Stroganov Anton, Radenovic Aleksandra, Manley Suliana, Nature Communications 10 (2019)

• Steering tissue morphogenesis via stimuli-sensitive hydrogels

  Dataset title : Synthetic dynamic hydrogels promote degradation-independent in vitro organogenesis
  Dataset persistent identifier : 10.5281/zenodo.5243103
  Responsible person : CHRISNANDY Antonius
  Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
  URL : https://zenodo.org/record/5243103#.YZN8amDMKUk
  Related article: Chrisnandy Antonius, Blondel Delphine, Rezakhani Saba, Broguiere Nicolas, Lutolf Matthias P. Nature Materials (2021)

   

  Dataset title : Homeostatic mini-intestines through scaffold-guided organoid morphogenesis
  Dataset persistent identifier : GSE148366
  Responsible person : Nicolas Broguiere

  Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
  URL : https://github.com/nbroguiere/Miniguts
  Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

   

  Dataset title : Mini-guts.1
  Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328232.v1
  Responsible person : Mike Nikolaev
  Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
  URL : https://figshare.com/articles/dataset/GSEA_CellTypes_Cryptosporidium_Infection_xlsx/12328232/1
  Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

   

  Dataset title : Mini-guts.2
  Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328286.v1
  Responsible person : Mike Nikolaev
  Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
  URL : https://figshare.com/articles/figure/Supplementary_Figure_3_pdf/12328286/1
  Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

   

  Dataset title : Miniguts code
  Dataset persistent identifier :
  Responsible person : Nicolas Broguiere
  Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
  URL : https://github.com/nbroguiere/Miniguts
  Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

• Design of digestion-inspired functional food nano-biointerfaces

  Dataset title :pH-responsive aminolipid nanocarriers for antimicrobial peptide delivery
  Dataset persistent identifier : 10.5281/zenodo.5042103
  Responsible person : GONTSARIK Mark
  Project(s) involved : Design of digestion-inspired functional food nano-biointerfaces
  URL : https://zenodo.org/record/5042103#.YOLT_egzaUl
  Related article: Gontsarik Mark, Mansour Amira Ben, Hong Linda, Guizar-Sicairos Manuel, Salentinig Stefan, Journal of Colloid and Interface Science 603, 398 (2021)

• Development of a Microfluidic Platform

  Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [Embryoids10XG]
  Dataset persistent identifier : GSE171209
  Responsible person : Nicolas Broguiere
  Project(s) involved : Development of a Microfluidic Platform
  URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171209
  Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

   

  Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [EmbryoidsTruseq3]
  Dataset persistent identifier : GSE171211
  Responsible person : Nicolas Broguiere
  Project(s) involved : Development of a Microfluidic Platform
  URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
  Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

• Support staff

  Dataset title : Versatile macroscale concentration gradients of nanoparticles in soft nanocomposites
  Dataset persistent identifier : 10.5281/zenodo.3673890
  Responsible person : BALOG Sandor
  Project(s) involved : Support staff
  URL : https://zenodo.org/record/3673890#.Xk-a1yMo_b0
  Related article: Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Balog Sandor, Small 1905192 (2020)