Datasets

The full list of datasets underlying the articles of the NCCR Bio-inspired Materials can be found below. Click the desired project to see the associated datasets.

It is also possible to find the available datasets by browsing through the full list of publications.

 

  • Mechanically responsive and mechanically adapting polymers

    Dataset title : Mechanoresponsive elastomers made with excimer-forming telechelics
    Dataset persistent identifier : 10.5281/zenodo.4249552
    Responsible person : KIEBALA Derek
    Project(s) involved : Mechanically responsive and mechanically adapting polymers
    URL : https://zenodo.org/record/4249552
    Related article: Kiebala Derek J., Fan Zhiyuan, Calvino Celine, Fehlmann Lauren, Schrettl Stephen, Weder Christoph, Organic Materials 2, 313 (2020)

  • Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates

    Dataset title : Hemozoin-catalyzed precipitation polymerization as an assay for malaria diagnosis
    Dataset persistent identifier : DOI 10.5281/zenodo.2541603
    Responsible person : RIFAIE GRAHAM Omar
    Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
    URL : https://zenodo.org/record/2541603#.XirEC2hKiUk
    Related article: Rifaie-Graham Omar, Pollard Jonas, Raccio Samuel, Balog Sandor, Rusch Sebastian, Hernández-Castañeda María Andrea, Mantel Pierre-Yves, Beck Hans-Peter, Bruns Nico, Nature Communications 10 (2019)

     

    Dataset title : Light-responsive block copolymers with a spiropyran located at the block junction
    Dataset persistent identifier : 10.5281/zenodo.3314608
    Responsible person : APEBENDE Edward
    Project(s) involved : Mechanically responsive block copolymer nanoreactors inspired by the marine bioluminescence of dinoflagellates
    URL : https://zenodo.org/record/3314608#.YMnETKgzaUk
    Related article: Apebende Edward A., Dubois Laurent, Bruns Nico, European Polymer Journal 119, 83 (2019)

  • Mechano-responsive CaCO3-based coatings

    Dataset title :Load-bearing hydrogels ionically reinforced through competitive ligand exchanges
    Dataset persistent identifier : md5:b4e39d46a4e58ddc2ae050be4ee8097a
    Responsible person : HIRSCH Matteo
    Project(s) involved : Mechano-responsive CaCO3-based coatings
    URL : https://zenodo.org/record/5543689#.YVb297gzaUk
    Related article: Hirsch Matteo, Steinacher Mathias, Zhao Ran, Amstad Esther Biomaterials Science 9, 6753 (2021)

  • Design of novel optical materials via self-assembly of patchy particles

    Dataset title : Design of Experimental (RSM) model, ANOVA table, SEM, VSM and Zeta potecial data for the nanocrystal clusters based on iron oxide
    Dataset persistent identifier : 10.5281/zenodo.5055479
    Responsible person : NEDYALKOVA Miroslava
    Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
    URL : https://zenodo.org/record/5055479#.YOLMtugzaUl
    Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

     

    Dataset title : Dynamic light scattering data
    Dataset persistent identifier : 10.5281/zenodo.5055535
    Responsible person : NEDYALKOVA Miroslava
    Project(s) involved : Design of novel optical materials via self-assembly of patchy particles
    URL : https://zenodo.org/record/5055535#.YOLSyOgzaUl
    Related article: Medinger Joelle, Nedyalkova Miroslava, Lattuada Marco, Nanomaterials 11, 360 (2021)

  • Interplay of order and disorder in biophotonic materials

    Dataset title : Strong circular dichroism in single gyroid optical metamaterials
    Dataset persistent identifier : 10.5281/zenodo.3760438
    Responsible person : WILTS Bodo
    Project(s) involved : Interplay of order and disorder in biophotonic materials
    URL : https://zenodo.org/record/3760438#.XrkmTWgzZjU
    Related article: Kilchoer Cédric, Abdollahi Narjes, Dolan James A., Abdelrahman Doha, Saba Matthias, Wiesner Ulrich, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., Advanced Optical Materials, 1902131 (2020)

     

    Dataset title : What’s in a band? The function of the colour and banding pattern of the Banded Swallowtail
    Dataset persistent identifier : 10.5061/dryad.qz612jm9p
    Responsible person : WILTS Bodo
    Project(s) involved : Interplay of order and disorder in biophotonic materials
    URL : https://datadryad.org/stash/dataset/doi:10.5061/dryad.qz612jm9p
    Related article: Tan Eunice J., Wilts Bodo D., Tan Brent T. K., Monteiro Antónia, Ecology and Evolution (2020)

     

    Dataset title : Determining the complex Jones matrix elements of a chiral 3D optical metamaterial
    Dataset persistent identifier : 10.5281/zenodo.3471335
    Responsible person : WILTS Bodo
    Project(s) involved : Interplay of order and disorder in biophotonic materials
    URL : https://zenodo.org/record/3471335#.YMnDmqgzaUk
    Related article: Kilchoer Cédric, Abdollahi Narjes, Steiner Ullrich, Gunkel Ilja, Wilts Bodo D., APL Photonics 4, 126107 (2019)

  • Structurally colored micron scaled pigments for inkjet printing

    Dataset title : Transition from light diffusion to localization in three-dimensional amorphous dielectric networks near the band edge
    Dataset persistent identifier : 10.5281/zenodo.3968424
    Responsible person : FROUFE PEREZ Luis Salvador
    Project(s) involved : Structurally colored micron scaled pigments for inkjet printing
    URL : https://doi.org/10.5281/zenodo.3968424
    Related article: Haberko Jakub, Froufe-Pérez Luis S., Scheffold Frank, Nature Communications 11 (2020)

  • Disguising the core: Photonic core-shell particles

    Dataset title :Research Data supporting "Photonic particles made by the confined self-assembly of a supramolecular comb-like block copolymer"
    Dataset persistent identifier : 10.5281/zenodo.5517508
    Responsible person : MORICEAU Guillaume
    Project(s) involved : Disguising the core: Photonic core-shell particles
    URL : https://zenodo.org/record/5517508#.YVFZQjFBw2x
    Related article: Moriceau Guillaume, Kilchoer Cédric, Djeghdi Kenza, Weder Christoph, Steiner Ullrich, Wilts Bodo D., Gunkel Ilja Macromolecular Rapid Communications, 2100522 (2021)

  • Bioinspired DNA self-assembly of nanophotonic devices

    Dataset title :cibion-conicet/SIMPLER v1.0.0
    Dataset persistent identifier : 10.5281/zenodo.4300989
    Responsible person : ACUNA Guillermo
    Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
    URL : https://zenodo.org/record/4300989#.YMnmFKgzaUk
    Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

     

    Dataset title : SIMPLER_data
    Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.13326599.v1
    Responsible person : ACUNA Guillermo
    Project(s) involved : Bioinspired DNA self-assembly of nanophotonic devices
    URL : https://figshare.com/articles/figure/Source_data_for_Szalai_et_al/13326599/1
    Related article: Szalai Alan M., Siarry Bruno, Lukin Jerónimo, Williamson David J., Unsain Nicolás, Cáceres Alfredo, Pilo-Pais Mauricio, Acuna Guillermo, Refojo Damián, Owen Dylan M., Simoncelli Sabrina, Stefani Fernando D., Nature Communications 12 (2021)

  • Novel antiviral supramolecular materials

    Dataset title :Nature-inspired Circular-economy Recycling (NaCRe) for Proteins: Proof of Concept
    Dataset persistent identifier : 10.5281/zenodo.5167184
    Responsible person : GIAVERI Simone
    Project(s) involved : Novel antiviral supramolecular materials
    URL : https://zenodo.org/record/5167184#.YVqQDDFBw2x
    Related article: Giaveri Simone, Schmitt Adeline Marie, Roset Julià Laura, Scamarcio Vincenzo, Murello Anna, Cheng Shiyu, Menin Laure, Ortiz Daniel, Patiny Luc, Bolisetty Sreenath, Mezzenga Raffaele, Maerkl Sebastian Josef, Stellacci Francesco Advanced Materials, 2104581 (2021)

     

    Dataset title : SARS-CoV-2 inhibition by sulfonated compounds
    Dataset persistent identifier : 10.5281/zenodo.4321274
    Responsible person : GASBARRI Matteo
    Project(s) involved : Novel antiviral supramolecular materials
    URL : https://zenodo.org/record/4321274#.X9eaT-lKhTZ
    Related article: Gasbarri Matteo, V’kovski Philip, Torriani Giulia, Thiel Volker, Stellacci Francesco, Tapparel Caroline, Cagno Valeria, Microorganisms 8, 1894 (2020)

     

    Dataset title : Modified cyclodextrins as broad-spectrum antivirals
    Dataset persistent identifier : 10.5281/zenodo.3686789
    Responsible person : GASBARRI Matteo
    Project(s) involved : Novel antiviral supramolecular materials
    URL : https://zenodo.org/record/3686789#.Xl5o4ndFxPb
    Related article: Jones Samuel T., Cagno Valeria, Janeček Matej, Ortiz Daniel, Gasilova Natalia, Piret Jocelyne, Gasbarri Matteo, Constant David A., Han Yanxiao, Vuković Lela, Král Petr, Kaiser Laurent, Huang Song, Constant Samuel, Kirkegaard Karla, Boivin Guy, Stellacci Francesco, Tapparel Caroline, Science Advances 6, eaax9318 (2020)

  • NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet

    Dataset title :Detection of sub-micro- and nanoplastic particles on gold nanoparticle-based substrates by surface-enhanced Raman scattering (SERS) spectroscopy
    Dataset persistent identifier : 10.5281/zenodo.4722747
    Responsible person : TALADRIZ-BLANCO Patricia
    Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on "soft and rigid" nanoparticle carpet
    URL : http://doi.org/10.5281/zenodo.4722747
    Related article: Caldwell Jessica, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanomaterials 11, 1149 (2021)

     

    Dataset title : Particle surfaces to study macrophage adherence, migration and clearance
    Dataset persistent identifier : 10.5281/zenodo.3819724
    Responsible person : SEPTIADI Dedy
    Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
    URL : https://zenodo.org/record/3819724#.YMm6fqgzaUk
    Related article: Septiadi Dedy, Lee Aaron, Spuch‐Calvar Miguel, Moore Thomas Lee, Spiaggia Giovanni, Abdussalam Wildan, Rodriguez‐Lorenzo Laura, Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Advanced Functional Materials, 2002630 (2020)


    Dataset title : Rapid and sensitive quantification of cellular associated multi-walled carbon nanotubes
    Dataset persistent identifier : 10.5281/zenodo.3744716
    Responsible person : FINK Alke
    Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
    URL : https://zenodo.org/record/3744717
    Related article: Steinmetz Lukas, Bourquin Joel, Barosova Hana, Haeni Laetitia, Caldwell Jessica, Milosevic Ana, Geers Christoph, Bonmarin Mathias, Taladriz-Blanco Patricia, Rothen-Rutishauser Barbara, Petri-Fink Alke, Nanoscale 12, 17362 (2020)

     

    Dataset title : Characterization of the shape anisotropy of superparamagnetic iron oxide nanoparticles during thermal decomposition
    Dataset persistent identifier : 10.3390/ma13092018
    Responsible person : VANHECKE Dimitri
    Project(s) involved : NanoRoomba: Cellular uptake and durotaxis on ‘’soft and rigid‘’ nanoparticle carpet
    URL : https://zenodo.org/record/3876377/export/dcat#.YMm8OagzaUk
    Related article: Vanhecke Dimitri, Crippa Federica, Lattuada Marco, Balog Sandor, Rothen-Rutishauser Barbara, Petri-Fink Alke, Materials 13, 2018 (2020)

  • Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake

    Dataset title : Cellular Uptake of Silica and Gold Nanoparticles Induces Early Activation of Nuclear Receptor NR4A1
    Dataset persistent identifier : 10.5281/zenodo.6125809
    Responsible person : ALMEIDA Mauro
    Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
    URL : https://zenodo.org/record/6125809#.YlA4g8hByUk
    Related article: Sousa de Almeida Mauro, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Yajan Phattadon, Petri-Fink Alke, Rothen-Rutishauser Barbara, Nanomaterials 12 , 690 (2022)

     

    Dataset title : Increased uptake of silica nanoparticles in inflamed macrophages but not upon co-exposure to micron-sized particles
    Dataset persistent identifier : 10.5281/zenodo.3957810
    Responsible person : SUSNIK Eva
    Project(s) involved : Stimulation of cellular endocytosis for sensing and enhancing nanoparticle uptake
    URL : https://zenodo.org/record/3957810#.X2Ik_GgzaUk
    Related article: Susnik Eva, Taladriz-Blanco Patricia, Drasler Barbara, Balog Sandor, Petri-Fink Alke, Rothen-Rutishauser Barbara, Cells 9, 2099 (2020)

  • Trapping cancer cells with self-assembling biomolecules

    Dataset title : Membrane-Interacting DNA Nanotubes Induce Cancer Cell Death
    Dataset persistent identifier : 10.5281/zenodo.5186797
    Responsible person : KOCABEY Samet
    Project(s) involved : Trapping cancer cells with self-assembling biomolecules
    URL : https://zenodo.org/record/5186797#.YRpP9Hzis2x
    Related article: Kocabey Samet, Ekim Kocabey Aslihan, Schneiter Roger, Rüegg Curzio Nanomaterials 11 , 2003 (2021)

     

    Dataset title : Detection of HER2+ Breast Cancer Cells using Bioinspired DNA-Based Signal Amplification
    Dataset persistent identifier : 10.5281/zenodo.3698042
    Responsible person : KOCABEY Samet
    Project(s) involved : Trapping cancer cells with self-assembling biomolecules
    URL : https://zenodo.org/record/3698042#.XmJwg0oo-Uk
    Related article: Rafiee Sarah, Kocabey Samet, Mayer Michael, List Jonathan, Ruegg Curzio, ChemMedChem (2020)

  • Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing

    Dataset title : Correlative 3D microscopy of single cells using super-resolution and scanning ion-conductance microscopy
    Dataset persistent identifier :
    Responsible person : NAVIKAS Vytautas
    Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
    URL : https://srm.epfl.ch/DatasetPage?name=SICM_SOFI_dataset
    Related article: Navikas Vytautas, Leitao Samuel M., Grussmayer Kristin S., Descloux Adrien, Drake Barney, Yserentant Klaus, Werther Philipp, Herten Dirk-Peter, Wombacher Richard, Radenovic Aleksandra, Fantner Georg E. Nature Communications 12 (2021)

     

    Dataset title : Waveguide-PAINT offers an open platform for large field-of-view super-resolution imaging
    Dataset persistent identifier : 10.5281/zenodo.1475055
    Responsible person : GLUSHKOV Evgenii
    Project(s) involved : Fluorescent nanodiamonds as quantum bio-molecular probes for live cell imaging and sensing
    URL : https://zenodo.org/record/1475055#.XmertqhKiUk
    Related article: Archetti Anna, Glushkov Evgenii, Sieben Christian, Stroganov Anton, Radenovic Aleksandra, Manley Suliana, Nature Communications 10 (2019)

  • Steering tissue morphogenesis via stimuli-sensitive hydrogels

    Dataset title : Synthetic dynamic hydrogels promote degradation-independent in vitro organogenesis
    Dataset persistent identifier : 10.5281/zenodo.5243103
    Responsible person : CHRISNANDY Antonius
    Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
    URL : https://zenodo.org/record/5243103#.YZN8amDMKUk
    Related article: Chrisnandy Antonius, Blondel Delphine, Rezakhani Saba, Broguiere Nicolas, Lutolf Matthias P. Nature Materials (2021)

     

    Dataset title : Homeostatic mini-intestines through scaffold-guided organoid morphogenesis
    Dataset persistent identifier : GSE148366
    Responsible person : Nicolas Broguiere

    Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
    URL : https://github.com/nbroguiere/Miniguts
    Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

     

    Dataset title : Mini-guts.1
    Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328232.v1
    Responsible person : Mike Nikolaev
    Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
    URL : https://figshare.com/articles/dataset/GSEA_CellTypes_Cryptosporidium_Infection_xlsx/12328232/1
    Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

     

    Dataset title : Mini-guts.2
    Dataset persistent identifier : https://doi.org/10.6084/m9.figshare.12328286.v1
    Responsible person : Mike Nikolaev
    Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
    URL : https://figshare.com/articles/figure/Supplementary_Figure_3_pdf/12328286/1
    Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

     

    Dataset title : Miniguts code
    Dataset persistent identifier :
    Responsible person : Nicolas Broguiere
    Project(s) involved : Steering tissue morphogenesis via stimuli-sensitive hydrogels
    URL : https://github.com/nbroguiere/Miniguts
    Related article: Nikolaev Mikhail, Mitrofanova Olga, Broguiere Nicolas, Geraldo Sara, Dutta Devanjali, Tabata Yoji, Elci Bilge, Brandenberg Nathalie, Kolotuev Irina, Gjorevski Nikolce, Clevers Hans, Lutolf Matthias P., Nature (2020)

  • Design of digestion-inspired functional food nano-biointerfaces

    Dataset title :pH-responsive aminolipid nanocarriers for antimicrobial peptide delivery
    Dataset persistent identifier : 10.5281/zenodo.5042103
    Responsible person : GONTSARIK Mark
    Project(s) involved : Design of digestion-inspired functional food nano-biointerfaces
    URL : https://zenodo.org/record/5042103#.YOLT_egzaUl
    Related article: Gontsarik Mark, Mansour Amira Ben, Hong Linda, Guizar-Sicairos Manuel, Salentinig Stefan, Journal of Colloid and Interface Science 603, 398 (2021)

  • Development of a Microfluidic Platform

    Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [Embryoids10XG]
    Dataset persistent identifier : GSE171209
    Responsible person : Nicolas Broguiere
    Project(s) involved : Development of a Microfluidic Platform
    URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE171209
    Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

     

    Dataset title : Bioengineered embryoids mimic post-implantation development in vitro [EmbryoidsTruseq3]
    Dataset persistent identifier : GSE171211
    Responsible person : Nicolas Broguiere
    Project(s) involved : Development of a Microfluidic Platform
    URL : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
    Related article: Girgin Mehmet U., Broguiere Nicolas, Hoehnel Sylke, Brandenberg Nathalie, Mercier Bastien, Martinez Arias Alfonso, Lutolf Matthias P. Nature Communications 12 (2021)

  • Support staff

    Dataset title : Versatile macroscale concentration gradients of nanoparticles in soft nanocomposites
    Dataset persistent identifier : 10.5281/zenodo.3673890
    Responsible person : BALOG Sandor
    Project(s) involved : Support staff
    URL : https://zenodo.org/record/3673890#.Xk-a1yMo_b0
    Related article: Taladriz‐Blanco Patricia, Rothen‐Rutishauser Barbara, Petri‐Fink Alke, Balog Sandor, Small 1905192 (2020)